Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015918658.1_cds_XP_016468065.1_60745
CDS Infomation

[gene=LOC107790624] [db_xref=GeneID:107790624] [protein=homeobox-leucine zipper protein HDG1-like isoform X3] [protein_id=XP_016468065.1] [location=join(37743..37957,38040..38157,38256..38942,39198..39302,39382..39594,41880..42054,42131..42495,42606..42986)] [gbkey=CDS]
Sequence

ATGGAAGGTATAGGTGACATGGGTTTGATAGGGGAAAATTTTGATGCTGTTGCAATGGGA
AGGTCCTCTAGAGAGGATGAATACGAGAGCAGGTCCGGCAGTGATAACTTAGATGGTGGT
GCATCGGGCGATGACCAGGACACTCCTCTTGGTAAATCATCCAGAAAAAAGAAATACCAT
AGGCACACCCCATACCAAATCCAACAACTTGAAGCTGCTTTTAAAGAGAATCCACATCCT
GATGAAAAAGCAAGACTAGAACTTGGTAAGAGACTGACGTTGGAGAGCAGGCAGGTGAAG
TTTTGGTTCCAAAATAGAAGAACCCAAATGAAGACCCAATTGGAACGCCACGAAAATGCA
ATCTTGAAGCAAGAAAATGATAAGCTTCGGATAGAGAACATAGCAATGAAGGAAGCCATG
AGAAGCCCAATGTGCGGCCATTGTGGTGGTCAGGCAATTCTTGGTGAGATACACATTGAA
GAGCATCATTTAAGGATTGAGAATGCTCGGCTGAGAGATGAACTTAATAGGATCTGTGTC
CTGGCGAATAAGTTTTTGGGAAGGCCTTTGGGATCTTTTCCTGGTACAATGCCGCCTGGA
ATGGCTAATTCTGGTTTGGAACTTGCAGTGGGAAGAAATGGCTTTGGTGCTATGAACTCT
GTTGACACTGCATTGCCAATGGGGCTTGATTTTGGCAATGGTCTCTCAAGTCCTCTAACA
ATGATGTCCCCTAGGCCCACCCCAAGCATGAGTAATACAGATGTATCCTTTGATAAGTCC
ATGTTAATGGAGCTTGCGTTTGCTGCGATGAATGAGCTGCTTAAGCTGGCCGAGATTGGT
GATCCTCTGTGGTTTAGAAACTTTGACGGAAGTGGGGAAGCATTGAACCTTGAGGACTAT
GCTAGGTCCTTTCCTCCATGTATTGGCATGAAACCGTCCAATTTCACGACAGAAGCAACA
AAGGCAACTGGTACAGTGATGATCAACTGTCTGGCCTTGGTGGAGACTCTGATGGATACA
AGTCGATGGGTGGAGATGTTCTCAAGCATTGTTGGAAGAACCTCAACAATTGATGTGATT
TCCAGCAGCAGCACAAGTGGAAGCAGGAATGGCAATCTGCAATTGATTCAAGCCGAGTTC
CAAGTTCTTTCTGCTTTAGTTCCTGTCCGTCAAGTAAAGTTTCTCCGCTTCTGCAAGCAA
CACGCTGAAGGCGTCTGGGCTGTGGTGGATGTGTCTATTGACGCAATCCAAGAAGGTTCA
CAACCACGTGAAGCTGGAAATTGCAGGAGGCTCCCTTCTGGATGTATTGTGCAAGACTTG
CCTAATGGTTACTCCAAGGTTATTTGGATTGAGCACATGGAATATGATGAGAATACCATC
CACAATTTCTACCGCCCTTTCATCAGGTCTGGCCGGGGCTTTGGTGCCCAACGGTGGATT
GCCACCCTGCAAAGACAATGCGAGTGCCTGGCAGTCATCACGTCTTCTGCTGTACCCAGT
GGCGATAGCGCAGCAGTTGTTAGTCCCAGTGGTCGGAGAAGTATTGCAATGCTGGCTCGA
CGCATTACTCGCAACTTCTGTGGTGGGGTTTGTGCAACTTTTTACAAGTGGGAACCGATC
CAAACAGGGACCGCAGAAGATACTAAGTTGATGATGAGGAAGAGCATTGGTGAACCCGGT
GAGCCTCCTGGTATCGTGTTGAGTGCCACCAGGACCATCTGGCTGCCGGTGACACATCAA
CGTTTGTTTGACTTCCTGCGAAATGAACAAACCAGGAGTCAATGGGATGTCTTGTCCCAT
GGTGGTCCCATGCACCAAATAGTACACATTGCCAAGGGTCAGGATCTTGGCAATAGCATC
TCTCTCTTTCGCGCTAATGCGGCTGCCAGCGATGCTAATCAAAATAGTATGTTGATCTTG
CAAGACTCTTGCACGGATGTATCTGGTTCAATTGTAGCATATGCAGCAGTTGATACTGCA
GAAATGAATGTCGTGATGAGTGGTGGAGATTCTTCCTGCGTGGCTTTCCTGCCATCTGGA
TTTGCAATAGTTCCAGATTGTTTTCAAAATTCTAACAACGGAATGCTTGAAAAAGAGGAC
AATGGGGGTAGCAGTAACGGGTCTTTGTTGACGTTGGGATTCCAAATATTGGTGAATAGC
TTGCCAGCAGCAAAGCTCACTATGGAGTCGGTCGACACCGTTAATGCACTCATCTCACGT
ACACTTCAGGGTATAAAAACTGCTTTCCAGTGCAATTAA

Peptide Sequence

PEP ID

XP_016468065.1
PEP Infomation

PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X3 [Nicotiana tabacum]
Sequence

MEGIGDMGLIGENFDAVAMGRSSREDEYESRSGSDNLDGGASGDDQDTPLGKSSRKKKYH
RHTPYQIQQLEAAFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMKTQLERHENA
ILKQENDKLRIENIAMKEAMRSPMCGHCGGQAILGEIHIEEHHLRIENARLRDELNRICV
LANKFLGRPLGSFPGTMPPGMANSGLELAVGRNGFGAMNSVDTALPMGLDFGNGLSSPLT
MMSPRPTPSMSNTDVSFDKSMLMELAFAAMNELLKLAEIGDPLWFRNFDGSGEALNLEDY
ARSFPPCIGMKPSNFTTEATKATGTVMINCLALVETLMDTSRWVEMFSSIVGRTSTIDVI
SSSSTSGSRNGNLQLIQAEFQVLSALVPVRQVKFLRFCKQHAEGVWAVVDVSIDAIQEGS
QPREAGNCRRLPSGCIVQDLPNGYSKVIWIEHMEYDENTIHNFYRPFIRSGRGFGAQRWI
ATLQRQCECLAVITSSAVPSGDSAAVVSPSGRRSIAMLARRITRNFCGGVCATFYKWEPI
QTGTAEDTKLMMRKSIGEPGEPPGIVLSATRTIWLPVTHQRLFDFLRNEQTRSQWDVLSH
GGPMHQIVHIAKGQDLGNSISLFRANAAASDANQNSMLILQDSCTDVSGSIVAYAAVDTA
EMNVVMSGGDSSCVAFLPSGFAIVPDCFQNSNNGMLEKEDNGGSSNGSLLTLGFQILVNS
LPAAKLTMESVDTVNALISRTLQGIKTAFQCN

Transcript Sequence

Gene sequence data has not been registered.